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Circos plot for ecoli genome

Hello all I am given task for plotting circos plot I want a circular plot having 1 St circle of ecoli genome 2nd circle of upregulated genes 3 Rd circle of down regulated genes and 4th circle of GC content 2circle inside 1 3 inside 2 4inside 3 I tried using omiccircos and tutorials also I am not able to understand It would be very appreciable if some help me out. Thanks

rna-seq circos
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updated by Ram Ram • written by raya.girish • raya.girish

Your first circle should be made in the form of cytobands which form arcs of the circle.And then you can have mappings of genes (with positions)based on those cytobands. If you want to link those genes,there should be a separate data table for that. For each of arcs,mappings and links there should be a different data table.

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written by Ron Ron

hi Ron this i understood in omiccircos there is some commands like what is the meaning of this what this commands actually does seg.num < -10; ind.num <- 20; seg.po <- c (20:50) ;

sim.out <- sim.circos ( seg=seg.num , po=seg.po , ind=ind.num )

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written by raya.girish • raya.girish

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