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Making a circos plot to show expression for a gene set rather than whole genome

Hello,

I am a new user to the OmicCircos package and the R code. For a little while I have been trying to create a circos plot to show the expression of a gene set. However, after constructing data frames with gene names and segment sizes, the segAnglePo and sim.circos functions consistently revert to the hg19/hg18 genome to form the anchor of the figure. If someone please explain how to construct an anchor for the circos plot using a set of genes rather than the entire human genome it would be much appreciated.

Kind regards,

Peter.

gene set omiccircos
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updated by Biostar Biostar • written by Peter.Wood • Peter.Wood

Try this one its a standalone set up with templates to format your data. I have installed "circos.ca" but not yet tried

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written by 1769mkc 1769mkc

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