How to work with KEGG
I want to use KEGG to know the genes found in specific organ. I try to submit the data but i did not found result until now as i submit it from 3 or 4 days
gene
• 1,057 views
•
link
updated
by
Biostar
380
• |
written
by
walaa.shaalan
0
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Type of Normalization done to TCGA level 3 Methylation Data
written by danhmed 0Hello! I have TCGA level 3 methylation data on CHOL and I want to replicate DMR analysis procedure in a paper I am reading but …
-
How to compute module completion ratio of KEGG modules from KO identifiers? (command line)
written by O.rka 75I was previously using [KEGG-MAPLE](https://www.genome.jp/tools/maple/) to compute module completion ratios for metagenome assembled genomes. However, this tool was web only (very frustrating) and also it …
-
How to do simple pathway analysis?
written by Seq225 11I have a set of 100 genes (the AA sequences) from a non-model plant species. Now I want to simply identify which pathways they belong …
-
Recommendations for CNV calling algorithms/programs to benchmark
written by seraphya 1I want to benchmark the time/resource use and breakpoint accuracy of CNV callers on multiple individual NGS data at 30x-100x coverage at specific CNVs. A …
-
GeneSCF: problem with KEGG annotation
written by sdum 2Hello, I use geneSCF since several months without problems to annotate human gene list with sym id against GO_all and KEGG databases. However, since some …
-
what is the best to use, blast x or blast n?
written by walaa.shaalan 0I have results from KEGG and I want to do Blast for some genes in NCBI, Do you think Blastx better or Blastn??I just want …
-
Blastp how to find and count duplicates?..
written by Buffo 246Hi everybody, I did a blastp on linux command line (about 7,500 genes), outfmt6, I did a filter (e-value, max_hsps, etc), just one hit per …
-
Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
written by CandiceChuDVM 250Please see my latest answer for the inconsistency in Panther vs KOBAS2.0. Can anyone recommend other platforms for KEGG? ================================================================== Hi all, I am analyzing …
-
How To Quantify "Overlapping Degree" Between Two Samples
written by qiyunzhu 43<p>I am trying to screen for genes that possess a certain trait within a genome. I know that a previous study did the same thing …
-
Find Kegg Pathway That Contain Certain Genes
written by NetunoPoncã 16<p>Hi,</p> <p>I have a file that contains multiple gene lists (triples of genes). For each triple I want to know if there is a KEGG …
Your question is lacking so much detail, that it is impossible to give an answer, please explain exactly what you have tried, which organ? Submit to where? which data?
Hello walaa.shaalan!
We believe that this post does not fit the main topic of this site.
It is highly unclear what you are asking.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!