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RNASeq detection of TERRA

Does anyone know of a way to look for TERRA(Telomeric repeat-containing RNA TERRA) mapping reads in RNAseq data??? I know TERRA is polyadenylated so I should have it somewhere in my sequencing run it just doesnt seem to have a transcript ID.

Any suggestions are greatly appreciated.

-Ashley

rna-seq
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updated by mdidish • mdidish • written by aazar955 • aazar955

Does anyone have a solution to quantify TERRA by RNA-Seq? Can not find a solution on Google, and the link below (PNAS) does not provide details. Best

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written by mdidish • mdidish

1 answer

This might help: http://www.pnas.org/content/112/46/E6293.long

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written by vakul.mohanty vakul.mohanty

Thanks for the link, I looked at this paper earlier and it was slightly lacking in the details I was looking for but definitely a good paper.

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written by aazar955 • aazar955

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