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How to work PLINK from server?

Hi, I want to run PLINK for gene association from the server. So how to install Plink in our server? Thank you very much

snp
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updated by Biostar Biostar • written by forever forever

What have you tried? The manual, by chance?

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written by WouterDeCoster WouterDeCoster

2 answers

Have you seen the instructions on the PLINK website for downloading and installing PLINK?

http://pngu.mgh.harvard.edu/~purcell/plink/download.shtml

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written by mastal511 mastal511

I read it, but it did not talk about how to install it on the server. For example to run R script on server we can write: R CMD BATCH helloworld.r so for PLINK what we shall write?

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written by forever forever

You are talking about two different things, execution and installation of a tool/script.

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written by WouterDeCoster WouterDeCoster

If you scroll down far enough on the page I gave a link to above, there is a section called 'Running PLINK from the command line' which gives you some examples of plink commands.

In addition, there is useful documentation here http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-doc-1.07.pdf

Chapter 1 is Getting started with PLINK, and Chapter 2 is a tutorial using a small dataset.

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written by mastal511 mastal511

Hi, Do you have an update on the link you gave. It goes to partners healthcare page. Thanks

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written by ccolmenares • ccolmenares

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