Hello everyone,
I have a list of genes. I want to know which of these are separated by nomore than eight genes (not present in the gene list) on genome using a gff file.
I guess you will have to writte your own script for that. Using bioperl you can load all thé feature in memory with thé slurp method then you read the features sorted by start from left to right ans do your Cook to detect what you want.
Hello everyone, I want to design a microarray probe set for Coccomyxa subellipsoidea C-169 which has been [fully sequenced][1]. I need to make a target …
<p>Does anybody know of how to tell from tophat/cufflinks output that whether or not a transcript is fused or not compared to gff annotation (reference …
I guess you will have to writte your own script for that. Using bioperl you can load all thé feature in memory with thé slurp method then you read the features sorted by start from left to right ans do your Cook to detect what you want.