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convert genotype to allelic for plink

hi

I am new in pink, my problem is convert my data for bed file, my dat form is ID AA AB AA BB ... about 20000, I haven't FID,MID, SEX I want the form ID A A A B B B. please write me linux command

thanks

software error
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written by alipanah.masoud • alipanah.masoud

What should happen to indels? Or is this from a SNP array? What should happen to missing genotypes?

In addition, what have you tried? It's good practice to first show us what you tried and how far you got.

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written by WouterDeCoster WouterDeCoster

thanks WouterDECoster

I add space with R program but can't split using splitstackshope in plink when using compound genotype in last command line. I see following error "Problem with compound genotype [ B.B.1 ] should be two characters long"

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written by alipanah.masoud • alipanah.masoud

Please use ADD REPLY to answer to earlier posts, as such this thread remains logically structured and easy to follow.

In addition, I have no idea what splitstackshope is and what your error exactly means.

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written by WouterDeCoster WouterDeCoster

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