Metassembler problem in mateAn
Hi,
I have two genome libraries of a plant with different insert sizes and I assembled both with SOAPdenovo. Now i'm trying to merge the two assemblies with Metassembler but the process stops in CEstat (the nohup output show "No inicial primary CE-stat"). I don't know what that means, can someone help me?
PD: the program works with mate-pair reads but my data is Paired-end, could be that the problem?
Thanks.
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That could indeed be one of the problems. Mate-pair libraries sample the genome at a much longer distances than PE libraries. If the MateAn program requires one of the libraries to be a mate-pair one then you are not satisfying that requirement.