How to convert bedpe to bed
Hi all,
I've got a bedpe file via bedtools bamtobed command. Right now I want to convert the bedpe file into bed file.
Do I use bedtools bedpetobam to first convert bedpe into bam then again use bedtools bamtobed to bed? Or is there any way to do that ?
Thanks a lot for your input!!
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Why not generating
bamtobedin the first place?Because I need to have a copy of bedpe file for further usage.
After remove duplicate from bedpe file, I need the corresponding BED file for downstream analysis.