Hello,
How do we detect highly variable/ Highly polymorphic SNP's in genome. Say I need to find the a set of highly variable SNP from each chromosome of human genome.
Is there any tool or database to find this. Hope to hear from you
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written
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Sebastian •
Look here, it may be helpful:
http://www.humgen.nl/SNP_databases.html
But this article from 2012 is also good:
Human Genome Sequencing in Health and Disease
Data from the 1k human genomes has ALT allele frequencies. I would download it from: https://mathgen.stats.ox.ac.uk/impute/1000GP_Phase3.html And, then select biallelic SNPs with high frequency of ALT allele (columns 6-10).
Thank you It worked.
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I need to retrieve a set of SNP from each chromosome (exon region )human where each SNP's have a gap of 100000 bp. the snp's should be evenly distributed. The frequency is also needed for this
Please suggest any web tools /methods
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