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blast results combining with genome annotation

I have BLAST results and I just wondering what would be the easiest way to combine them with annotation in GFF3 files. I would like to get the gene name from the blast hit.

Thank you in advance.

blast gene
• 3,396 views • link
written by Ric Ric

1 answer

use intersectbed

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written by Prasad Prasad

I found blast2bed, but how can I can extract the intersect sequence?

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written by Ric Ric

I thought you wanted gene name from the gff. What sequences you want to extract? Subject sequence to which your query is similar??

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written by Prasad Prasad

I found blast2bed, but how can I can extract the intersect sequence?

• 0 views • link
written by Ric Ric

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