Biostar Beta. Not for public use.
find motif enrichment/depletion analysis
0
Entering edit mode
3.9 years ago
mariamari693 • 10

Hi, For the first time I want to do motif analysis. I have a set of differentially ATAC seq from the comparision between one control vs 3 different treatments and I did clustering and I found 5 different clusters. I would like to do a motif search (known motif) and make a heatmap for enriched/depleted motif. I tried MEME suite (Centrimo) and I only copy paste my bed->fa files one by one and got 5 files per each cluster. Tables contain E-value,log_adj_p-value, ... but how can I calculate enriched/depletion. Is there any script/software that can help me Thanks

ADD COMMENTlink
0
Entering edit mode

Both the E-value and P-value are measures of enrichment in this case. Not sure what kind of heatmap you have in mind

ADD REPLYlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.3.1