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Viral Genome Annotation / Website

Hi Colleagues,

What's the best online website or tool for viral genome annotation?

Thanks

next-gen rna-seq
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updated by Biostar Biostar • written by Arash • Arash

Maybe it is better to edit your question title to "Viral Genome Annotation / Website".

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written by Farbod Farbod

Dear Farbod,I changed title.Thanks for your help.

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written by Arash • Arash

Thank you for your attention, it helps people to answer you more accurately and others to find their answer.

Ghorbanat and good luck!

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written by Farbod Farbod

Farbod jan , I did map reads (Case / Control) to Gallus Gallus genome Fasta file (iGenome) by Geneious software.The software produce31 map files.When I want to calculate expression level , but I got the following message : You have to use ref file with mRNA annotation" Please help me to select correct ref file.Thanks.

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written by Arash • Arash

1 answer

Hi Arash,

Have you tried VIGOR or NCBI viral genomes ?

and in this post there are some sharing about personal experiences .

~ Best

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written by Farbod Farbod

Thanks,i did with VIGOR

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written by Arash • Arash

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