More posts like this
-
Finding RNA genes associated with X protein expression in CITE-seq Seurat object
written by PicasaHi everyone, I’m working with a CITE-seq dataset using Seurat. In the ADT (protein) assay, I see that some cells express the protein marker X …
-
Repeat detection/masking in bacteria
written by liorglicHi there, In eukaryote genome annotation, repeat masking is an important step in a genome annotation pipeline, and there are many dedicated tools and pipelines …
-
GWAS - QC & Tutorials.
written by flight505Hi, 👋 I was looking through Biostars to find some good resources to get started. Unfortunately, most of the posts are really old 4+ years …
-
Test set for WGS analysis pipeline
written by gwotto •Hi, I am developing a pipeline for whole-genome sequencing analysis, including software to align sequences (e.g. bwa), quality control and variant calling, e.g. by GATK. …
-
Coverage per contig from a BAM file
written by PicasaHi, I have a BAM file, I'm looking to compute the coverage for each contig and a general coverage (so I'm looking for a number …
-
microRNA microarray or small RNASeq
written by syrez •Hi all! Recently, we were given a choice between microRNA microarray OR small RNASeq for mouse. Upon further discussion, someone raised a question if mouse …
-
How to create chain file to change genome coordinates from one genome version to another
written by iraunHi there, I'm looking for a 'protocol' or I would like to know the best way to create a **chain file** in order to get …
-
Assembly and annotation statistics collection of various eukaryote genomes
written by Prakki RamaHi all, Did any one come across (or already compiled) a table or a collection of different organisms genome assembly, annotation stats at one place? …
-
How to write well in science, especially in bioinformatics?
written by jackHi all, I'm looking for resources to improve my scientific writing . would someone introduce some resources for that?
-
Gatk Snp Calling Test Set
written by Tryingtogetthere •<p>Does anyone have/or know of a test exome data set for GATK? They have a single chromosome and another small example but I looking for …
Eukaryotic Genome Annotation in 2016