Surpi Base Taxonomy
Hello, When i'm try run SURPI (v1.0.22), the script
taxonomy_lookup_embedded.pl
have this error :
DBD::SQLite::db selectrow_arrayref failed: no such table: gi_taxid at ./taxonomy_lookup_embedded.pl line 118.
Have you an idea ? Thanks a lot.
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Pierre Lindenbaum
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written
by
guipagui •
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guipagui •
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Is this for pathogen detection?
Yes, but this troubleshooting isn't referenced at old post
i haven't solution for the moment. The installation of database with sqlite works without error's message
If you are flexible with using tools,you can try using Kraken https://ccb.jhu.edu/software/kraken/
Yes, it's a possible issue, but it will better to fix the problem.