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a problem in GISTIC2.0 calculation

I run the GISTIC2.0 calculation. In the focal result, one cytoband of deleted regions named "20p12.1" is with a wide peak boundary chr20:1-63025520. The length of chr 20 is 64Mb and I chose the value of focal length cutoff as 0.50 before calulation. How did this region (nearly the whole chr 20) appeared in the focal result. Does anyone know?

snp
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written by jamesrenwu • jamesrenwu

Unless you are sure that this is an error in the tool and you have complete understanding about it, I think it would be more polite to talk about "unexpected results" rather than a mistake.

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written by WouterDeCoster WouterDeCoster

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