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any option in somatic sniper to analyze on a region or bed file of regions?

We generally farm things out to a cluster and give each job a small section of the genome and then combine the outputs. Is there an option for analyzing only a region or a set of regions from a bed file in somaticsniper?

snp genome

1 answer

No, there is not. This other Biostars question and answer provide a work around. Using SomaticSniper to call variants in specific regions?

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