VerifyBamID freemix score?

I was wondering if anyone here can explain how does the freemix score is calculated and what it is exactly! I have read the paper but really appreciate a lay explanation.

ngs

• 1,933 views • link

written 9.8 years ago by reza.jabal

0 answers

No answers yet.

More posts like this

minModuleSize WGCNA
written 3.0 years ago by Sara •

Hi all, I have a question regarding choosing the minModuleSize for WGCNA. in the tutorial, they suggested the minModuleSize = 30, but I was wondering …
WGCNA: Gene Significance in WGCNA
written 4.6 years ago by v.johnson •

I wonder if anyone might be able to explain to me how Gene Significance is calculated in WGCNA using a binary trait comparison? I am …
Analyzing ChIP-seq without input
written 7.1 years ago by Assa Yeroslaviz

I was wondering if anyone can tell me what is the advantages and disadvantages of doing a ChIP-Seq experiment with input samples (as oppose to …
Exonerate raw score to percent identity
written 7.2 years ago by tim.ivanov.92 •

Does anyone know what exactly does line “raw score” in [exonerate][1] output mean? For example I attach here a screenshot of a full hit, where …
allelic specific expression with Kallisto
written 8.6 years ago by Assa Yeroslaviz

Hi all, I was wondering if someone can tell me where I can find more about how to do an allele-specific Expression (ASE) analysis using …
ExAC PLI score calculation
written 9.4 years ago by jonessara770

Hello all, could you please simply explain for me how PLI score has been calculated? can we use it to filter the list of variants? …
Platypus and IBD sharing
written 11.0 years ago by reza.jabal

I was wondering if anyone here has worked with Platypus and possibly know if the software is able to detect IBD sharing among individuals?
PhastCons score and LOD
written 11.8 years ago by lomolith •

Hi everyone. I have a question during I trying to understand phastCons output. Can anybody explain me what different between phastCon's conservation score and LOD? …
How Is The Score And E-Value Calculated In Blast Outputs
written 15.1 years ago by Beeth •

Hi! I am working on a BLAST similar tool and wanted to implement the Score (raw Alignment score) and the E-value. I was wondering if …
What Is Snp Calling?
written 16.3 years ago by Giovanni M Dall'Olio

What does it mean 'SNP calling', exactly? Can anyone explain it to me, or at least point me to a good explanation on Internet? …