Using kallisto for metagenomic analysis
Is there a guide or tutorial for using kallisto for metagenomic analysis? I've seen multiple papers mention that application and I found the metakallisto GitHub page ( https://github.com/pachterlab/metakallisto ), but there is no documentation anywhere.
1 answer
Looks like the repo was updated. Full documentation was added to README on January 12 and now there is also a publication to go along with it.
Pseudoalignment for metagenomic read assignment: https://academic.oup.com/bioinformatics/article/doi/10.1093/bioinformatics/btx106/3038398/Pseudoalignment-for-metagenomic-read-assignment
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