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problem in CAP - miRSeq

I am trying to use CAP - miRSeq pipeline for miRNA seq data but getting problem: Bowtie reference files missing. what should I do?

rna-seq
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updated by brent_wilson brent_wilson • written by rs544 • rs544

1 answer

Hi rs544,

I'm not sure this is really enough information to answer your question. It could be any number of things. Maybe CAP doesn't have some permissions it needs, or you may need to index the reference file with Bowtie first. Just a couple of guess, since I don't have much to go on. Good luck!

Brent Wilson, PhD | Project Scientist | Cofactor Genomics

4044 Clayton Ave. | St. Louis, MO 63110 | tel. 314.531.4647

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written by brent_wilson brent_wilson

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