Keep the KEGG coordinates while passing KEGG pathway (graphNEL) to igraph
Hello Everyone,
I downloaded the KEGG pathway using the parseKGML2Graph FUNCTION and when i plot the graph directly it shows a nice graph with KEGG coordinates, But when i convert the graphNEL object to igraph using igraph.from.graphNEL , it loses it coordinates. I want the same coordinates as KEGG graph, How can i do it ?
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Biostar
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saamar.rajput
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saamar.rajput
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Can you include some code that we can use as a minimum reproducible example? The attributes of the nodes in the
graphNELobject can be obtained bygetKEGGnodeData()and there (in thegraphicsslot for each node) you can find information likexandycoordinates. But I am not sure if that is what you are looking for.