I tried to extract the orthologs and paralogs based on get_my_evol_events(). One of my speciation node (#7, for example), i.e one inferred as ev.etype =="S" contains a paralog in a deeper node. The out_seq generates a list that includes all the species of node #7. Instead, is there a way to extract corresponding subtree of node #7 and further process it for split by duplication ?. Can anyone suggest a way to achieve this ?
Thanks in advance.