I have a few PB runs on the same organism but in new (bax.h5) and old (bas.h5) format, presumably from different times and different instruments. In the past I had HGAP complaining when wrong type of file format was provided. I am using the most recent v2.3 version of smrtanalysis. How would you go about this when creating fofn for single HGAP analysis?

File format conversion? Run independent analyses with multiple versions of software?