How to use SNPEff software for comparison of a set of 100 VCF files?
How to use SNPEff software for comparison of a set of 100 VCF files? Is there any example or a recipe?
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Have you considered the manual? http://snpeff.sourceforge.net/SnpEff_manual.html
I think you should have a look on SnpSift not SNPEff also away from Snp...
have a look at http://varianttools.sourceforge.net/ specially http://varianttools.sourceforge.net/Vtools/Compare
thank you................................................