How to use SNPEff software for comparison of a set of 100 VCF files?
How to use SNPEff software for comparison of a set of 100 VCF files? Is there any example or a recipe?
• 2,711 views
•
link
written
by
valentina_stepanenko •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Variant annotation tools
written by a.hasankhani74 •
-
Are there any code samples on how to use Prokka annotator with GNU parallel?
written by hockeytoronto2018 •
-
How to download a 100 fastq files at once using SraToolkit fastq-dump?
written by flight029000 •
-
How to select predefine transcript when annotate VCF
written by Paul
-
Are there any new/novel R packages and other software to compare a 100 of VCF files?
written by genomicswolf •
-
How to use Varianttools sofwtare for comparing 50 VCF files to find unique differences?
written by valentina_stepanenko •
-
Is there any novice method for finding similar VCF files, for their comparison to 100 items and mor…
written by valentina_stepanenko •
-
SnpEff output summary for hundreds of vcfs
written by moorem
-
VCF format conventions for multi-sample vs. single-sample data
written by bberns •
-
Vcf-Compare Vcftools Error
written by Leandro Batista •
Have you considered the manual? http://snpeff.sourceforge.net/SnpEff_manual.html
I think you should have a look on SnpSift not SNPEff also away from Snp...
have a look at http://varianttools.sourceforge.net/ specially http://varianttools.sourceforge.net/Vtools/Compare
thank you................................................