Tools for just generating a file including all shared variants in all VCF files
Hello, I have 4 VCF files which represent variants files from 4 different samples.
- I do not want to merge them because it takes a lot of time and computer resources.
- I want to generate a separated VCF format file which has all shared variants by comparing all samples
Thank you!
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Obtain one vcf file of shared SNPs from input files with different samples using vcf-isec (vcftools)
Identifying private and shared SNPs using VCFtools