Ghostx database formation error
When I use ghostx db to convert nr.gz to format ghost x format database file, the following error message occurred. nr.gz was downloaded from NCBI ftp.
$ ./ghostx db -i nr.gz -o nrdb
error : basic_string::_S_create
• 1,927 views
•
link
updated
by
Ram
•
written
by
wintergb •
•
written
by
wintergb •
1 answer
Did Ghostx support gzip-compressed fasta file?
The usage says:
-i STR Protein sequences in FASTA format for a database
You can try to decompress the nr.gz
• 1 views
•
link
written
by
shenwei356
Log in to answer this question.
More posts like this
-
BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
written by Bertalan_Takacs •
-
NCBI NR protein db nr.gz FASTA inflate error?
written by nina.maryn •
-
Problems setting up nt blast database
written by goatsrunfaster •
-
BLAST Database error: No alias or index file found for protein database [nr] in search path [D:\Tes…
written by Eric Wang •
-
To get a total combined Fasta file from nr.gz file
written by dpktiwari168 •
-
How can I create LASTdb for nr.gz data?
written by MAPK
-
Using nr database for BLAST search
written by cookm346 •
-
Diamond blastx error: Missing parameter: DAA file (--daa/-a)
written by wintergb •
-
BLAST Database creation error
written by vigneshprbh37 •
-
Opening A Fasta File In Windows
written by Vivek •
