Hi,
I have some data in form of vectors generated from DNA sequences. Each data vector represent stretch of DNA sequence. Visually data looks like signals and and they follow some patterns. Problem here is they are not aligned so i can not compare those signals with each other. I want to align them in such a way that I can get maximum correlation. I know there is a command in MATLAB which can easily find cross correlation between two signals. Does anyone know if similar thing can also be done in R ?
Thanks, Chirag.
•
written
by
Chirag Parsania
1 answer
You can align numerical sequences using dynamic time warping. Classical dynamic time warping and many variants are implemented in the R package dtw.
In R, cross-correlation is implemented in the ccf() function.
Log in to answer this question.
-
positional conservation scores
written by wannabio •
-
biological vs. technical definition of "insert size"
written by sovrappensiero •
-
Log2 FC vs log2 FC scatterplot comparison between RNA-Seq data replicates
written by pablo_iturralde •
-
Incorporating Ensembl and Fasta Data
written by sacamanobob800 •
-
Representing a sequence as k-mer composition
written by mdurrant •
-
How can I make feature vectors using PSSM matrix?
written by MT •
-
What all informatics approaches are available to compare DNA methylation across species
written by Saad Khan
-
Alignment Problem
written by Julien Textoris
-
Detecting Trace Contamiants In Sanger Sequencing
written by Swbarnes2
-
Visualizing Pairwise Distance Between A Group Of Sequences
written by David M
