What is "SPOT" and "BASES" in SRA database
I have downloaded this file for RNA-seq analysis in SRA database.
ILLUMINA (Illumina HiSeq 4000) run: 28.7M spots, 8.6G bases, 3.3Gb downloads Accession: SRX1604705
what does 'spot' and 'base' mean exactly in SRA database?
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p.a.moghimi1 •
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navankutty •
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navankutty •
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The answer to this question is previously addressed here: A: What Is A "Spot" In Sra Format
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p.a.moghimi1 •
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Spots --> Clusters that generated sequence. Bases --> Like the name says nucleotides.