What do I do with two SRR Runs per Sample
For the following data: here, it says that for one sample, there are two runs.
- 2 ILLUMINA (Illumina NovaSeq 6000) runs: 48.8M spots, 4.9G bases, 1.4Gb downloads
- Runs: 2 runs, 48.8M spots, 4.9G bases, 1.4Gb
- SRR19199897
- SRR19199898
What should I do with the data in this case? I used fasterq-dump on both thinking that maybe one was the forward and the other was the reverse for paired-end data, but they both return R1 and R2 reads. Should I use both of these in my analysis or only one? Furthermore, they both have a different number of reads when I use fasterq-dump. Thank!
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aimanbarki •
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James •
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They are technical repeats. You can use both of them as one sample in the analysis.