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error during installationi of KisSplice

Hello, I was trying to install KisSplice on a HPC (not a root user). After successfully running cmake . and typed make install, I got this:

[  1%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o
cc1plus: error: unrecognized command line option "-std=c++11"
make[2]: *** [debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o] Error 1
make[1]: *** [debruijn-v4/CMakeFiles/ks_debruijn4.dir/all] Error 2
make: *** [all] Error 2

Could someone tell me how to fix this? Or what favor I should ask my administrator for?

By the way, I have 9 samples of 3 conditions. Would it be less sufficient if I want to call SNPs?

Many thanks

cpp c rna-seq kissplice snp
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updated by Ram Ram • written by yoyofangliu • yoyofangliu

What version of g++ --version are you running? You need to update g++ to v. 4.3 or better based on that error.

• 1 views • link
written by GenoMax GenoMax

Thanks for the reply

g++ --version g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) Copyright (C) 2010 Free Software Foundation, Inc.

Looks like it's v. 4.4

• 1 views • link
written by yoyofangliu • yoyofangliu

Hello yoyofangliu,

Were you eventually able to make KisSplice run? We still wait your response.

Thanks.

• 1 views • link
written by leandro.ishi.lima leandro.ishi.lima

Which version of KisSplice did you try to install ? Do not trust KisSplice 2.4.0-p1 I failed to install it on CentOS 6.7 as it throws the same error you had, even when I upgraded GCC to GCC 4.8.2. However, KisSplice 2.4.0 installed with no problem at all.

• 0 views • link
written by vectorio9128 • vectorio9128

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