I would like to estimate the hydropathy of proteins, of which some contain Selenocysteine or Pyroolysine .
These amino acids seem excluded from standard implementations of algorithms such as gravy. Similarly I could not find information regarding the hydropathy of those amino acids within proteins, which would enable me a custom estimation of the hydropathy of these proteins.
Is there an accepted adaptation for estimating hydropathy of proteins containing Selenocysteine or Pyrrolysine?
•
written
by
unksci
1 answer
See this paper:
http://lori.academicdirect.org/works/?f=208
MODELLING ANALYSIS OF AMINO ACIDS HYDROPHOBICITY
This examplr of organism with these aminoacids:
High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic
deltaproteobacterium of gutless worm Olavius algarvensis
Log in to answer this question.
-
On retrieving SNPs from dbSNP
written by Agenor Neto •
-
Tool: Proteome-pI 2.0 - Proteome Isoelectric Point Database
written by Lukasz Kozlowski •
-
Stats help: test for positional amino acid enrichment
written by brismiller •
-
Bi-gram feature extraction from a protein sequence.
written by arijeetsat •
-
Solid features to extract from protein sequences?
written by unksci
-
OMA parameter error Message
written by chevivien
-
Nucleotide and amino acid identity calculation
written by akbar.shahid •
-
Fast search for many patterns
written by sbliven •
-
Eukaryotic Cell From Scratch
written by caters123 •
-
Check Integrity Of Pdb Files
written by NPalopoli
