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How to cluster sequences present in multiple fasta files

Hi,

I have this situation, where i want to compare sequences present in multiple fasta files, and here one fasta file is one organism and i want to see co-relation between these organisms in terms of dendogram or clustering or anything.

So i want to compare sequences present in one file with another and see the relation between files, so is there any tool or method by which i can compare these files.

Thank You

ngs alignment blast
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updated by Sej Modha Sej Modha • written by namz • namz

1 answer

You can use cd-hit with 1.0 identity and redundancy 1 (-t parameter) to cluster sequences in multi fasta file.

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written by Sej Modha Sej Modha

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