How did I find this gene expression file?
Hello everyone,
I have kind of a strange question. I have a file with gene expression in different human cell lines and I even have the download link for it ( http://genome.crg.es/~sdjebali/Gencode/version19/GeneExpression/gencodev19_genes_with_RPKM_and_npIDR_oct2014.txt.gz ). Here is some lines from the file:
gene_id gene_name LID16627-LID16628.longPolyA.K562.cell LID16629-LID16630.longPolyA.GM12878.cell ...
ENSG00000000003.10 TSPAN6 0.413585:0.186661:0 0.040802:0.043046:0.130666666666667 ...
ENSG00000000005.5 TNMD 0:0:NA 0:0:NA ...
ENSG00000000419.8 DPM1 86.084362:59.567423:0 83.899909:54.60801:0 ...
...
I remember that I found the link to this file along with its description on some web-site. Particularly, it was described there why expression of a gene is specified using 3 numbers separated by ":", e.g. "86.084362:59.567423:0". However, I can not recall what this web site was. Any ideas?
Thank you in advance, Ivan
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What do you mean by "I can't recall what this web site was"? Do you mean what analysis did that file come from?
It may be data from this paper.
Better contact the person from the link,
Sarah Djebali
Post Doctoral researcher
Centre de Regulacio Genomica
Grup de Recerca en Informatica Biomedica
Doctor Aiguader, 88 | 08003 BARCELONA
Tel. +34 933 160 167 | Fax +34 933 160 550
sdjebali@imim.es | www.imim.es
http://big.crg.cat/people/sarah_djebali
It looks like some privately sharing FTP.
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