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Assigning function and pathway to bacterial gene vs eukaryotic genes.

Dear all, I am curious to know how will I go about assigning function to the newly sequenced genes from bacterial genome using COG and pathways using KEGG.
What if I want the same thing with eukaryotic genes, do I use same databases.
In what way both cases may differ?
What tools are suitable for Eukaryotic genes and for prokaryotic genes? or these databases just contain everything and I get hits from that?

sequence genome sequencing gene
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written by Naren Naren

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