pattern finding between sequences
How to find pattern between these sequences? That generated by regx -
GGGGGTGGAGG,GGCGGGGTGGGGG,GGCGGGGGGGG how to find GQSes between these sequences?
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pattern finding between sequences
written by srivvivek20 0I want to count the number of occurrences of GQSes. How to find a GQS pattern between sequences? like 3:1:1 (GGCGGGTGGGG),4:2:1 (GGGGAGGGAGGGGG),23:21:7 (GGAGGAGGGGGTGGAGGAGGGGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGAGGAGGGGGTGGAGGG) Expression is …
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How To Find A Pattern For Consensus Sequences Using Java?
written by abhishalovers 0How to find a pattern for consensus sequences using java?
Please word your question better and give us more context. Please read item #3 on A: How do I ask a question on Biostars?
You can use fuzznuc from EMBOSS.
See also this site, it may be helpful.
http://www.bioinformatics.org/sms2/dna_pattern.html
But you have to ask for a particular pattern.
What does GQS stand for? It's a new term for me :)
G-quadruplex forming sequences (GQS).