pattern finding between sequences
I want to count the number of occurrences of GQSes.
How to find a GQS pattern between sequences?
like 3:1:1 (GGCGGGTGGGG),4:2:1 (GGGGAGGGAGGGGG),23:21:7 (GGAGGAGGGGGTGGAGGAGGGGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGAGGAGGGGGTGGAGGG)
Expression is as follow- regex.py -f -r [gG]{2,}\w{1}){3,}[gG]{2,} regex.py -f -r ([gG]{2,}\w{1,2}){3,}[gG]{2,} regex.py -f -r ([gG]{2,}\w{1,4}){3,}[gG]{2,}' regex.py -f -r ([gG]{3,}\w{1,3}){3,}[gG]{3,} regex.py -f -r '([gG]{3,}\w{1,7}){3,}[gG]{3,}'
The sequences are generated by this regX but i did not found exact pattern like 4:1:1 by programme.
Appreciate your time. Thanks!
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Hello srivvivek20!
Please do not post the same question in multiple threads like this and leave the other thread hanging (pattern finding between sequences ). Edit the other thread and add this information there.
For this reason we have closed this question.
Cheers!