Anyone with experience in Phyloseq in R?
Hi,
I looking for someone to please help me with using phyloseq in R, since I am having trouble working with it on some files. Please write if you can help!
Thank you!
phyloseq
r
qiime
• 2,103 views
•
link
updated
by
Bioinformatics_NewComer
•
written
by
espop23
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Free AI for R programming
written by mohamadzare6022 •Hi, I am looking for some free AI to help me with R Programming. Except for Chatgpt and Bing, Could you please recommend me some? …
-
Jaccard distance matric in Phyloseq
written by MSRSHi, I am a little bit confused about the Jaccard distance matrix in phyloseq R package. distance(esophagus, "jaccard", binary = TRUE) # vegdist jaccard > …
-
Issue interpreting plasmidSPAdes output
written by A_heath •Hi all, I am using plasmidSPAdes for plasmid prediction on raw sequencing datas. I ran the following command: spades.py -o PlasmidSPades_results -1 R1_raw_reads.fastq -2 R2_raw_reads.fastq …
-
Heatmap of mothur output with Phyloseq
written by dpcHi community!!! I want to visualise my data output analysed by mothur pipeline with Phyloseq package. I have gone through the phyloseq tutorial but still …
-
QUAST ignoring bam files
written by liorglicHello, I am having some trouble when I try to give QUAST pre-computed alignments with the --bam option. I have opened [an issue][1] on the …
-
aligned.sorted.bam.edgeCount output in rMATS
written by sneha108.ss •Hi, I am using rMATS to find differential splicing events. I was able to run it successfully but I'm having trouble understanding one particular output …
-
Error in phyloseq command
written by BioinfonextHi, I am using R codes for phyloseq analysis with qiime2 2011.18 data. it is showing some error. I am using codes from this link: …
-
Get CDS from WGS fasta OR download just CDS
written by moranrHi, I have many CDS for species genomes I wish to download. I can get 70% with a script. However, there are some I need …
-
How To Install Fastx-Toolkit
written by Kash<p>Hi all,</p> <p>I'm having trouble in installing fastx-toolkit. please someone tell me the exact clear steps on how to install it. Thank you inadvance.</p> <p>Regards, …
-
Tools For Predicting Functional Effects Of Snps?
written by viavialin •<p>Hi Everyone, </p> <p>I'm new to this field and first time posting, please bear with me.</p> <p>I am working on locating the functional effects of …
Could you please elaborate on the "trouble" and explain what the "some" files contain? what are you trying to achieve exactly. Please let us know the commands along with the exact error you encountered.
Run following command from R and paste the output here.