This is a test version of Biostars. For the public version, visit https://www.biostars.org.
LNRNA funcational annotation

I have Lnrna lists data in excel from microarray i want to do functiona annotation by DAVID or other source but problem is this the list i have multiple IDs how i can convert mutliple ID (genbank,ensemble,ucsc) into one refence list IDs or some other tool which want to do take mulitple list IDs?

Reply urgent please

rna-seq
• 3,043 views • link
written by Azhar • Azhar

Reply urgent please

Not a great idea - people are here helping out in their free time.

• 1 views • link
written by Ram Ram

3 answers

What do you mean by LNRNA ? Are you referring to LncRNAs (Long non-coding RNAs) ? If it is so, there are no functional annotation tool that can efficiently handle lncRNA functions but you can make use of these resources,

http://annolnc.cbi.pku.edu.cn/

http://mlg.hit.edu.cn/lncrna2function/

http://www.lncrnadb.org/

http://www.lncipedia.org/

http://ibl.mdanderson.org/tanric/_design/basic/index.html

http://mitranscriptome.org/

http://lncanet.bioinfo-minzhao.org/

• 1 views • link
written by EagleEye EagleEye

You should be able to use BioMart to convert your set of IDs from one name to another. However it does not take a list of multiple IDs at once. You would need to do several queries.

• 1 views • link
written by Denise CS Denise CS

yes lnc RNA thanks

• 1 views • link
written by Azhar • Azhar

Log in to answer this question.

More posts like this