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R package for sequence homology

I'm looking for an R package that can calculate sequence homology between two sequences, identical to what this online program does: http://fasta.bioch.virginia.edu/fasta_www2/fasta_www.cgi?rm=shuffle

I've been searching around but havent had any luck. Can anyone give any pointers?

sequence homology prss prfx
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written by floris.barthel • floris.barthel

Have you already looked at biostrings ? (May be not exactly same as shuffle)

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written by poisonAlien poisonAlien

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