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hg19 annotation with sequence ontology

I wonder if an annotation database exists which contains all known feature across the whole genom hg19 using keywords from sequence ontology ?

ontology annotation
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updated by Denise CS Denise CS • written by sacha sacha

2 answers

If you are interested in variants annotated according to the SO terms, download the VEP file from the Ensembl FTP for GRCh37 (=hg19).

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written by Denise CS Denise CS

Thanks , it exacly what I need ! I give you all my gold !

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written by sacha sacha

You can use Variant Effect Predictor or SnpEff to annotate Sequence Ontology features.

http://www.ensembl.org/info/genome/variation/predicted_data.html

http://snpeff.sourceforge.net/

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written by Asdp • Asdp

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