Do multiple sequence alignment according to the score matrix
Hi,
I have a score matrix that I made using my own way for some sequences. For the testing purposes I need to check whether the function I used to obtain scores is correct or wrong.So is there any tool for build the guide tree and after that do multiple sequence alignment, after giving the matrix score as input parameter?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
What exactly is Biopython's alignment.score variable?
written by Tom •
-
How the ClustalW do the sequence-profile alignment and profile-profile alignment?
written by hmedinasantacruz •
-
alignment with phylogenetic tree
written by qwzhang0601
-
How to derive phylo tree from two genes
written by shadowstep •
-
Get pairwise scores from alignment without re-aligning?
written by mpd •
-
PWMs and FDR
written by Opt •
-
How to calculate dN/dS values?
written by utkarsh.sood •
-
Basic question about protein distance with multiple sequence alignment
written by bds1217 •
-
Multiple sequence alignment and phylogenetic analysis
written by l.roca •
-
Micro-Rna Target Finding Using Miranda Tool
written by Abdul Rawoof
Hi i found UPGMA to create relevant guide tree giving score matrix as the input. But can any one know a tool to do multiple sequence alignments after giving guide tree as the input
Multiple sequence alignment tool Clustal-Omega can take --guidetree-in as input and can generate MSA based on that.