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The header in SOAPdenovo output ??
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13 months ago
Picasa • 390

Hi,

My output from the assembler SOAPdenovo2 is formatted like this

> scaffold148     17.4
> scaffold149     37.1

What is that second number ? Is it the coverage ? If yes I don't understand what it means in an assembly.

I mean the coverage is normally the number of time that a base is represented/sequenced. What does it mean in that case ??

soap fasta • 940 views
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Nobody got an answer ?

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What command in SOAPdenovo2 is that output from?

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SOAPdenovo-63mer all -s config.txt -K 31 -p 30 -o out

the config.txt is the formatted soapdenovo file with data path

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Did you have a look at Appendix B on soapdenovo2 webpage?

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2.4 years ago
Prasad ♦ 1.6k
India

this might help

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