Dataset of proteins and their interactions
I want to apply a statistical analysis of a protein protein interaction network with R.
For that I need a dataset of proteins and their interactions.(in csv if possible)
Where can I find a dataset?
Any suggestion will be greatly appreciable.
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natasha.sernova
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lol •
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lol •
1 answer
look at this question Where can I look for highly-reliable experimentally-validated PPI interactions?
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See this recent paper:
Path2PPI: an R package to predict protein-protein interaction networks for a set of proteins.
http://www.ncbi.nlm.nih.gov/pubmed/26733452
This sourse is for genes, you probably don't need it as it is, but who knows
http://www.r-bloggers.com/obtaining-a-protein-protein-interaction-network-for-a-gene-list-in-r/