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Gene id to gene name mapping

Hi All,

Can anyone suggest a way to extract gene Id to gene names mapping for A. thaliana.

Thanks, RT

gene id gene name
• 4,105 views • link
written by GR GR

Do you mean to extract the gene IDs corresponding to a set of gene names?

• 1 views • link
written by iraun iraun

I need it for all the A thaliana genes. For example,

Geneid | Genename |

AT4G21690.1 | GA3OX3 |

• 1 views • link
written by GR GR

You can use BioMart. Just give as input a list of arabidopsis gene IDs or gene names, and for the output you can select "Gene stable ID" and "Gene name" attributes. Is this what are you looking for?

• 1 views • link
written by iraun iraun

If you're working in R, you can use BioMartR. We have been very successful with it. However, there are a few times when the service (on the BioMart end) might be running slow or be unavailable, so make sure to account for that vs. thinking your R script has an error.

• 1 views • link
written by JP • JP

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