how is 1000g vcf generated ? call variants through all samples together or seperatly ?
2 answers
the quick answer would be multi-sample calling.
have you tried browsing the 1000g web site? you may want to start by looking at http://www.1000genomes.org/analysis, but further reading from http://www.1000genomes.org/1000-genomes-project-publications would be advisable.
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Jorge Amigo
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