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How to map and visualize differentially expressed genes on KEGG pathways

Hi all experts,

I am looking for a tool for mapping and visualizing differentially expressed genes on KEGG pathways, so that up and down regulated genes highlight with different colors. I searched on net, but could not find a perfect tool. I tried Pathvisio software, but my issue with it was importing KEGG pathways into this tool. Could you please give me your comments and suggestions on this issue or introduce any tool?

Thanks

differentially expressed gene kegg pathway
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updated by nsmaan • nsmaan • written by seta seta

Liux, Others: My GE file (data.txt) has identification columns such as, ENTREZID, Genename, etc. and i also have logFC and pvalue and padj, for each gene. Could someone please give me headstart on how to use KeggExp, using this file? Thank you

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written by nsmaan • nsmaan

2 answers

Thanks. Pathview sounds great, I'll try it.

• 1 views • link
written by seta seta

Maybe you could try KeggExp. Here is a example for highlight differentially-expressed genes: enter image description here

For more information about KeggExp, see the post here

PS: I am the author of KeggExp

• 1 views • link
written by liux.bio liux.bio

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