Hello Biostars community, I’m working on coassembling the genome of Desulfovibrio glucosivorans DMSS-1 using sequencing data from both PacBio RS and Illumina HiSeq 2000 platforms. …

I am trying to download some public RNA-seq data (paired-end) and I have encountered that there are some samples that have the same GEO Accession …

Hello everyone, I am attempting to download the fastq file for GSE151671 from SRA explore. However, this dataset seems a little unusual. For the Native …

Hi, I want to download fastq files from this study. Tried pysradb, `pysradb download -p SRP165962 --out-dir`but it downloads all empty folders `anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR806/SRR8068516/SRR8068516.sra` Any better …

Hi, I am trying to download direct RNA seq data produced by oxford nanopore sequencing from SRA ([SRP174366][1]). I know how to use sratoolkit prefetch …

I am trying to download the following Bacterial genome fastq data from the NCBI-SRA database, [NCBI-SRA weblink][1]. It was sequenced by paired end manner, but …

Hi, Does anyone know how I can obtain read counts from SRA files using Galaxy? For some reasons, I can't download the SRA files on …

I have a situation where I want to run batch script to align reads from a bunch of different samples in a GEO accession. Some …

I am trying to find very specific GEO dataset (http://www.ncbi.nlm.nih.gov/gds) for my study. I am able to filter geo sets according organism and study type, …

<p>Hi Experts, I am lost in GEO data sets and cannot figure out if the data is RNA seq or Micro array.</p> <p>Most of the …