This is a test version of Biostars. For the public version, visit https://www.biostars.org.
A working copy of NGSrich

Hi, Is there anyone who still have a functioning version of NGSrich? Even with the latest version I still get a Java execution error:

cd /software/NGSrich_0.7.8/bin
java NGSrich evaluate \
-r sample.bam \
-u hg19 \
-t /target_genes.bed \
-a refGene.txt \
-T /scratch/tmp  \
-o /NGSrich /coverage

For those who still have a functioning copy, could you please send me a zip of your version and specify your working environment? Or o anyone have any alternative, which provide pretty much the same output, i.e. list of poorly covered genes?

Many thanks

ngsrich software error
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written by kc.mailinglist • kc.mailinglist

You may have better luck if you provide a link to (and/or some explanation of what this software does). It may also be useful to provide a copy of the error message you get.

• 1 views • link
written by GenoMax GenoMax

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