Empty VCF file returned by ANNOVAR on Galaxy

Hi,

I have a VCF file which I need to annotate through ANNOVAR. But when I use the ANNOVAR tab provided by galaxy the result is a completely empty VCF file. Can someone please explain why this happens and what I should do?

P.S: I am not familiar with linux so I cannot use ANNOVAR directly,. Thus, I have to use it through galaxy.

Arvand

genome next-gen sequencing annovar galaxy

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updated 6.3 years ago by Biostar

• written 10.1 years ago by arvand.akbari •

Please ask this on the Galaxy support site.

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written 10.1 years ago by Devon Ryan

1 answer

Reply https://biostar.usegalaxy.org/p/18107/

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written 10.1 years ago by Jennifer Hillman Jackson

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