Hi!

Hope someone can clarify me this

I downloaded the gtf annotation from

http://www.gencodegenes.org/releases/26lift37.html

I generated my own bed file for annotate just the gen name on my vcf file, the fact is that I miss a few genes for example this one that don't appear (it does with annovar annotation), i also miss genes if I download from http://genome.ucsc.edu

chr1    158368309   T   G   1678.36 0   PASS    snp 0.000160388 [{'transcript':'NM_001004475.1','gene':'OR10T2','location':'downstream'}]

Does this happens to someone else?

Thanks